In silico study: molecular docking of SARS-Cov-2 endoribonuclease on active compounds of Gmelina arborea Roxb. bark

Authors

  • Shobiroh Nuur'Alimah IPB University
  • Agnia Nurul Jannati IPB University
  • Laksmi Ambarsari IPB University
  • Syamsul Falah IPB University

DOI:

https://doi.org/10.22302/iribb.jur.mp.v92i1.561

Keywords:

antioxidant, COVID-19, in silico, NendoU

Abstract

Infection by SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) triggers COVID-19 disease of the respiratory tract similar to pneumonia. The virus encodes four structural proteins and 16 non-structural proteins (nsp), one of which includes nsp15 or endoribonuclease (NendoU). NendoU plays an important role in viral replication and transcription and reduces the stimulation of immune cell responses. Active compounds in Gmelina arborea Roxb. bark have antioxidant properties that can inhibit the NendoU activity of SARS-CoV-2. This study aims to analyze the potential of compounds from Gmelina arborea Roxb. bark in inhibiting SARS-CoV-2 NendoU within in silico using the YASARA structure application. Balnophonin is the best test ligand based on binding ΔG value, dissociation constant (Kd), prediction of physicochemical characteristics, pharmacokinetics, and toxicity. Therefore, balanophonin can be developed as an effective alternative drug to inhibit SARS CoV-2 NendoU.

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Author Biography

Laksmi Ambarsari, IPB University

Biokimia

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Submitted

08-12-2023

Accepted

19-04-2024

Published

30-04-2024

How to Cite

Shobiroh Nuur’Alimah, Agnia Nurul Jannati, Ambarsari, L., & Syamsul Falah. (2024). In silico study: molecular docking of SARS-Cov-2 endoribonuclease on active compounds of Gmelina arborea Roxb. bark. Menara Perkebunan, 92(1), 70–81. https://doi.org/10.22302/iribb.jur.mp.v92i1.561

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